Whole genome shotgun sequencing of Salmonella enterica subsp. enteric... - SRA

SRX1661729: Whole genome shotgun sequencing of Salmonella enterica subsp. enterica serovar Typhimurium var. O:5- by Illumina MiSeq
1 ILLUMINA (Illumina MiSeq) run: 846,919 spots, 410.6M bases, 252.7Mb downloads

External Id: EXT00176141

Design: MiSeq deep shotgun sequencing of cultured isolate.

Submitted by: FDA Center for Food Safety and Applied Nutrition (CFSAN)

Study: GenomeTrakr Project: Texas Department of State Health Services

PRJNA284276 • SRP059203 • All experiments • All runs

show Abstracthide Abstract

Whole genome sequencing of cultured Salmonella as part of the US Food and Drug Administration surveillance project for the rapid detection of outbreaks of foodborne illnesses.

Sample:

SAMN04255222 • SRS1361358 • All experiments • All runs

Organism: Salmonella enterica subsp. enterica serovar Typhimurium var. 5-

Library:

Name: Salmonella enterica subsp. enterica serovar Typhimurium var. O:5- Nextera XT shotgun

Instrument: Illumina MiSeq

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: PAIRED

Construction protocol: Illumina Nextera XT library created for Salmonella enterica subsp. enterica serovar Typhimurium var. O:5-.

Spot descriptor:

1 forward251 reverse

Pipeline: show...hide...

Name	Step	Prev Step	Program	Version
base caller	0	NULL	RTA	1.8.5
demultiplexer	1	0	MiSeq Reporter	2.3

Runs: 1 run, 846,919 spots, 410.6M bases, 252.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR3294524	846,919	410.6M	252.7Mb	2016-03-25

ID:: 2380428

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Recent activity